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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030823 through 18771 annotations produced 1 hits



(CG8918):

Annotation Number : CG8918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030823
Gbrowse : chrX:17094758-17096631 (-) // 99.76 //
Probeset : 1634482_at
Accessions : protein= NP_573197;, nucleotide= NM_132969;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004835 // tubulin-tyrosine ligase activity //
FlyMine data for FBgn0030823.
VDRC has 2 RNAi stocks for FBgn0030823 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10Down
Head0 00 of 4 0.10Down
Eye0 00 of 4 0.07Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland4 20 of 4 0.46None
Crop1 00 of 4 0.10Down
Midgut2 00 of 4 0.30Down
Tubule3 00 of 4 0.30Down
Hindgut2 10 of 4 0.20Down
Heart0 00 of 4 0.06Down
Fat body7 50 of 4 0.80None
Ovary1 00 of 4 0.20Down
Testis193 84 of 420.00Up
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca2 00 of 4 0.25Down
Mated spermatheca9 20 of 4 0.97None
Adult carcass4 10 of 4 0.50None
Larval CNS1 10 of 4 0.20Down
Larval Salivary gland3 20 of 4 0.37None
Larval midgut4 10 of 4 0.49None
Larval tubule3 10 of 4 0.30Down
Larval hindgut3 10 of 4 0.33Down
Larval fat body10 71 of 4 1.00None
Larval trachea2 20 of 4 0.27Down
Larval carcass2 10 of 4 0.28Down
S2 cells (growing)0 00 of 4 0.10Down
Whole fly9 12 of 4

Looking for FBgn0030823. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime