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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030826 through 18771 annotations produced 1 hits



(CG12995):

Annotation Number : CG12995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030826
Gbrowse : chrX:17103472-17104123 (-) // 100.0 //
Probeset : 1637073_a_at
Accessions : protein= NP_728059;, nucleotide= NM_167561;
FlyMine data for FBgn0030826.
BioGrid reports that CG12995 interacts with CG15080 CG13434 CG15578 CG31175 .
VDRC has 2 RNAi stocks for FBgn0030826 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head4 ± 10 of 4 0.40Down
Eye1 ± 00 of 4 0.10Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland12 ± 60 of 4 0.95None
Crop5 ± 20 of 4 0.50Down
Midgut10 ± 20 of 4 0.80None
Tubule5 ± 00 of 4 0.40Down
Hindgut332 ± 284 of 426.40Up
Heart5 ± 10 of 4 0.44Down
Fat body7 ± 70 of 4 0.61None
Ovary3 ± 10 of 4 0.30Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands4 ± 10 of 4 0.40Down
Virgin spermatheca8 ± 10 of 4 0.66None
Mated spermatheca8 ± 30 of 4 0.70None
Adult carcass21 ± 40 of 4 1.70None
Larval CNS4 ± 00 of 4 0.39Down
Larval Salivary gland3 ± 00 of 4 0.25Down
Larval midgut12 ± 00 of 4 1.02None
Larval tubule8 ± 20 of 4 0.70None
Larval hindgut14 ± 10 of 4 1.12None
Larval fat body8 ± 20 of 4 0.70None
Larval trachea3 ± 10 of 4 0.27Down
Larval carcass4 ± 10 of 4 0.38Down
S2 cells (growing)3 ± 00 of 4 0.27Down
Whole fly12 ± 10 of 4

Looking for FBgn0030826. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime