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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030828 through 18771 annotations produced 1 hits



(CG5162):

Annotation Number : CG5162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030828
Gbrowse : chrX:17109334-17111249 (+) // 100.0 //
Probeset : 1634257_at
Accessions : protein= NP_573202;, nucleotide= NM_132974;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0005198 // structural molecule activity // infe
FlyMine data for FBgn0030828.
BDGP gene expression has embryonic in situ data for CG5162: 4 pix of staining in 1 body parts.
Homophila reports that CG5162 is a close match (3e-17) to human gene HDLCQ12;HL;LIPC;LIPH (NP_000227), a gene associated with Hepatic lipase deficiency (3);[High density lipoprotein cholesterol level QTL 12] (3);{Diabetes mellitus, noninsulin-dependent}, 125853 (3).
VDRC has 2 RNAi stocks for FBgn0030828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 ± 14 of 4 0.10Down
Head255 ± 124 of 4 0.50Down
Eye102 ± 124 of 4 0.21Down
Thoracicoabdominal ganglion38 ± 74 of 4 0.10Down
Salivary gland56 ± 34 of 4 0.11Down
Crop49 ± 34 of 4 0.10Down
Midgut170 ± 94 of 4 0.30Down
Tubule54 ± 74 of 4 0.10Down
Hindgut337 ± 124 of 4 0.70Down
Heart1290 ± 854 of 4 2.60Up
Fat body2232 ± 2134 of 4 4.50Up
Ovary11 ± 14 of 4 0.00Down
Testis47 ± 74 of 4 0.10Down
Male accessory glands1250 ± 2004 of 4 2.50Up
Virgin spermatheca1279 ± 984 of 4 2.58Up
Mated spermatheca1155 ± 854 of 4 2.33Up
Adult carcass1520 ± 754 of 4 3.10Up
Larval CNS33 ± 144 of 4 0.07Down
Larval Salivary gland13 ± 30 of 4 0.03Down
Larval midgut142 ± 54 of 4 0.29Down
Larval tubule9 ± 22 of 4 0.00Down
Larval hindgut156 ± 164 of 4 0.31Down
Larval fat body24 ± 62 of 4 0.00Down
Larval trachea2158 ± 2354 of 4 4.35Up
Larval carcass161 ± 114 of 4 0.33Down
S2 cells (growing)8 ± 22 of 4 0.02Down
Whole fly496 ± 134 of 4

Looking for FBgn0030828. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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