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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030829 through 18771 annotations produced 1 hits



(CG12998):

Annotation Number : CG12998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030829
Gbrowse : chrX:17112914-17113527 (+) // 100.0 //
Probeset : 1624525_at
Accessions : protein= NP_573203;, nucleotide= NM_132975;
FlyMine data for FBgn0030829.
BDGP gene expression has embryonic in situ data for CG12998: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030829 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.20None
Head3 ± 10 of 4 0.30None
Eye4 ± 10 of 4 0.33None
Thoracicoabdominal ganglion5 ± 00 of 4 0.50None
Salivary gland9 ± 20 of 4 0.73None
Crop6 ± 20 of 4 0.50None
Midgut12 ± 10 of 4 1.00None
Tubule6 ± 10 of 4 0.50Down
Hindgut3 ± 00 of 4 0.30None
Heart95 ± 871 of 4 7.40None
Fat body29 ± 143 of 4 2.26None
Ovary4 ± 11 of 4 0.40None
Testis3 ± 10 of 4 0.30None
Male accessory glands6 ± 10 of 4 0.50None
Virgin spermatheca5 ± 10 of 4 0.44None
Mated spermatheca8 ± 10 of 4 0.65None
Adult carcass191 ± 194 of 414.80Up
Larval CNS5 ± 20 of 4 0.45None
Larval Salivary gland2 ± 00 of 4 0.20None
Larval midgut22 ± 21 of 4 1.77None
Larval tubule6 ± 10 of 4 0.50None
Larval hindgut5 ± 00 of 4 0.41None
Larval fat body3 ± 10 of 4 0.30None
Larval trachea4 ± 30 of 4 0.32None
Larval carcass5 ± 20 of 4 0.46None
S2 cells (growing)4 ± 10 of 4 0.37None
Whole fly12 ± 33 of 4

Looking for FBgn0030829. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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