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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030830 through 18771 annotations produced 1 hits



(CG5172):

Annotation Number : CG5172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030830
Gbrowse : chrX:17115474-17116563 (+) // 100.0 //
Probeset : 1625181_at
Accessions : protein= NP_573204; /// NP_996495;, nucleotide= NM_132976; /// NM_206772;
FlyMine data for FBgn0030830.
BDGP gene expression has embryonic in situ data for CG5172: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.70None
Head10 11 of 4 2.10Up
Eye5 20 of 4 1.12None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland20 80 of 4 4.00None
Crop5 10 of 4 1.00None
Midgut15 12 of 4 3.10Up
Tubule5 00 of 4 1.20None
Hindgut6 20 of 4 1.20None
Heart2 10 of 4 0.46None
Fat body2 10 of 4 0.55None
Ovary1 00 of 4 0.20Down
Testis4 10 of 4 0.80None
Male accessory glands21 21 of 4 4.20Up
Virgin spermatheca1 10 of 4 0.32Down
Mated spermatheca0 00 of 4 0.17Down
Adult carcass7 21 of 4 1.50None
Larval CNS3 20 of 4 0.67None
Larval Salivary gland17 31 of 4 3.46Up
Larval midgut4 10 of 4 0.79None
Larval tubule8 31 of 4 1.70None
Larval hindgut5 10 of 4 1.03None
Larval fat body3 00 of 4 0.60None
Larval trachea1 00 of 4 0.27Down
Larval carcass7 30 of 4 1.45None
S2 cells (growing)2 00 of 4 0.50None
Whole fly5 00 of 4

Looking for FBgn0030830. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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