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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030833 through 18771 annotations produced 1 hits



helicasa (CG8915):

Annotation Number : CG8915
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030833
Gbrowse : chrX:17135294-17139028 (-) // 100.0 //
Probeset : 1628853_at
Accessions : protein= NP_573208;, nucleotide= NM_132980;
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0030833.
BDGP gene expression has embryonic in situ data for CG8915: 12 pix of staining in 5 body parts.
TRiP has 2 RNAi stocks for FBgn0030833 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 14 of 4 0.40Down
Head24 14 of 4 0.20Down
Eye21 04 of 4 0.19Down
Thoracicoabdominal ganglion40 34 of 4 0.40Down
Salivary gland37 14 of 4 0.33Down
Crop38 34 of 4 0.30Down
Midgut23 14 of 4 0.20Down
Tubule23 23 of 4 0.20Down
Hindgut30 24 of 4 0.30Down
Heart25 04 of 4 0.22Down
Fat body46 24 of 4 0.40Down
Ovary384 44 of 4 3.40Up
Testis57 54 of 4 0.50Down
Male accessory glands31 04 of 4 0.30Down
Virgin spermatheca46 34 of 4 0.41Down
Mated spermatheca50 14 of 4 0.44Down
Adult carcass28 14 of 4 0.30Down
Larval CNS92 64 of 4 0.81Down
Larval Salivary gland65 64 of 4 0.57Down
Larval midgut23 34 of 4 0.21Down
Larval tubule38 14 of 4 0.30Down
Larval hindgut38 04 of 4 0.33Down
Larval fat body41 34 of 4 0.40Down
Larval trachea43 34 of 4 0.38Down
Larval carcass35 14 of 4 0.31Down
S2 cells (growing)37 34 of 4 0.33Down
Whole fly113 24 of 4

Looking for FBgn0030833. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime