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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030834 through 18771 annotations produced 1 hits



(CG8675):

Annotation Number : CG8675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030834
Gbrowse : chrX:17142404-17143533 (-) // 100.0 //
Probeset : 1623615_at
Accessions : protein= NP_573209;, nucleotide= NM_132981;
FlyMine data for FBgn0030834.
VDRC has 1 RNAi stocks for FBgn0030834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 34 of 4 0.60Down
Head70 54 of 4 0.50Down
Eye84 54 of 4 0.62Down
Thoracicoabdominal ganglion93 74 of 4 0.70Down
Salivary gland116 94 of 4 0.86None
Crop123 24 of 4 0.90None
Midgut78 24 of 4 0.60Down
Tubule89 104 of 4 0.70Down
Hindgut96 34 of 4 0.70Down
Heart73 34 of 4 0.55Down
Fat body62 124 of 4 0.46Down
Ovary310 64 of 4 2.30Up
Testis18 42 of 4 0.10Down
Male accessory glands145 104 of 4 1.10None
Virgin spermatheca82 54 of 4 0.61Down
Mated spermatheca141 64 of 4 1.05None
Adult carcass68 74 of 4 0.50Down
Larval CNS143 34 of 4 1.07None
Larval Salivary gland125 44 of 4 0.93None
Larval midgut50 44 of 4 0.37Down
Larval tubule60 54 of 4 0.40Down
Larval hindgut91 14 of 4 0.68Down
Larval fat body66 84 of 4 0.50Down
Larval trachea179 64 of 4 1.33Up
Larval carcass97 144 of 4 0.73None
S2 cells (growing)88 14 of 4 0.66Down
Whole fly134 104 of 4

Looking for FBgn0030834. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime