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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030836 through 18771 annotations produced 1 hits



/// lethal(1)9Ed (CG8664 /// sesB):

Annotation Number : CG8664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030836
Gbrowse : chrX:17175805-17176744 (-) // 100.0 //
Probeset : 1636618_at
Accessions : protein= NP_511109; /// NP_573211; /// NP_727448; /// NP_727449; /// NP_727450;, nucleotide= NM_078554; /// NM_132983; /// NM_167246; /// NM_167247; /// NM_167248;
Pathway : engulfment // inferred from mutant phenotype /// 0007268 // synaptic transmission // inferred from direct assay /// 000
Interpro : 0005739 // mitochondrion // inferred from electronic annotation /// 0005740 // mitochondrial envelope // inferred from s
FlyMine data for FBgn0030836.
VDRC has 5 RNAi stocks for FBgn0030836 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.50None
Head12 10 of 4 1.30None
Eye1 00 of 4 0.17Down
Thoracicoabdominal ganglion4 10 of 4 0.50Down
Salivary gland3 10 of 4 0.30Down
Crop15 20 of 4 1.60None
Midgut52 24 of 4 5.10Up
Tubule6 10 of 4 0.60Down
Hindgut10 10 of 4 1.00None
Heart3 10 of 4 0.31Down
Fat body3 10 of 4 0.35Down
Ovary5 00 of 4 0.60Down
Testis15 10 of 4 1.60Up
Male accessory glands7 20 of 4 0.70None
Virgin spermatheca3 10 of 4 0.38Down
Mated spermatheca3 10 of 4 0.37Down
Adult carcass14 30 of 4 1.40None
Larval CNS1 00 of 4 0.13Down
Larval Salivary gland1 00 of 4 0.18Down
Larval midgut6247 1774 of 4612.52Up
Larval tubule5 10 of 4 0.50Down
Larval hindgut11 20 of 4 1.15None
Larval fat body28 191 of 4 2.80None
Larval trachea52 881 of 4 5.15None
Larval carcass1 00 of 4 0.18Down
S2 cells (growing)5 10 of 4 0.58None
Whole fly10 11 of 4

Looking for FBgn0030836. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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