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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030837 through 18771 annotations produced 1 hits



(CG8661):

Annotation Number : CG8661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030837
Gbrowse : chrX:17177793-17178516 (-) // 100.0 //
Probeset : 1629313_at
Accessions : protein= NP_573212;, nucleotide= NM_132984;
FlyMine data for FBgn0030837.
BDGP gene expression has embryonic in situ data for CG8661: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye4 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.02Down
Crop8 ± 10 of 4 0.00Down
Midgut4789 ± 534 of 414.90Up
Tubule3 ± 00 of 4 0.00Down
Hindgut11 ± 11 of 4 0.00None
Heart1 ± 00 of 4 0.00Down
Fat body2 ± 20 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.00Down
Mated spermatheca2 ± 00 of 4 0.01Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut5833 ± 2424 of 418.14Up
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut12 ± 10 of 4 0.04None
Larval fat body10 ± 51 of 4 0.00None
Larval trachea4 ± 81 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly321 ± 984 of 4

Looking for FBgn0030837. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime