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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030839 through 18771 annotations produced 1 hits



(CG5613):

Annotation Number : CG5613
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030839
Gbrowse : chrX:17317623-17322767 (+) // 100.0 //
Probeset : 1627400_a_at
Accessions : protein= NP_573215; /// NP_788923;, nucleotide= NM_132987; /// NM_176750;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0033925 // mannosyl-glycoprotein endo-beta-N-acetyl
FlyMine data for FBgn0030839.
BioGrid reports that CG5613 interacts with CG6904 .
VDRC has 2 RNAi stocks for FBgn0030839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 14 of 4 0.60Down
Head25 24 of 4 1.00None
Eye10 13 of 4 0.41Down
Thoracicoabdominal ganglion14 12 of 4 0.60Down
Salivary gland24 42 of 4 0.95None
Crop17 12 of 4 0.70Down
Midgut26 23 of 4 1.00None
Tubule32 44 of 4 1.30None
Hindgut24 24 of 4 1.00None
Heart41 24 of 4 1.61Up
Fat body31 63 of 4 1.22None
Ovary34 14 of 4 1.30Up
Testis58 34 of 4 2.30Up
Male accessory glands37 54 of 4 1.50None
Virgin spermatheca38 24 of 4 1.50Up
Mated spermatheca34 34 of 4 1.33None
Adult carcass47 14 of 4 1.80Up
Larval CNS17 14 of 4 0.68None
Larval Salivary gland30 34 of 4 1.19None
Larval midgut18 11 of 4 0.70None
Larval tubule25 23 of 4 1.00None
Larval hindgut26 14 of 4 1.05None
Larval fat body29 31 of 4 1.20None
Larval trachea23 44 of 4 0.92None
Larval carcass26 12 of 4 1.02None
S2 cells (growing)191 164 of 4 7.48Up
Whole fly25 24 of 4

Looking for FBgn0030839. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime