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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030841 through 18771 annotations produced 1 hits



(CG8568):

Annotation Number : CG8568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030841
Gbrowse : chrX:17343017-17346576 (-) // 100.0 //
Probeset : 1636836_at
Accessions : protein= NP_573217;, nucleotide= NM_132989;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030841.
BDGP gene expression has embryonic in situ data for CG8568: 19 pix of staining in 8 body parts.
VDRC has 3 RNAi stocks for FBgn0030841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 3.10None
Head1 ± 00 of 4 1.70None
Eye1 ± 00 of 4 2.32None
Thoracicoabdominal ganglion7 ± 20 of 4 8.40None
Salivary gland2 ± 10 of 4 3.35None
Crop1 ± 00 of 4 1.10None
Midgut0 ± 00 of 4 0.70None
Tubule1 ± 00 of 4 1.60Up
Hindgut0 ± 00 of 4 0.50None
Heart0 ± 00 of 4 1.00None
Fat body0 ± 00 of 4 0.71None
Ovary0 ± 00 of 4 1.00None
Testis2 ± 00 of 4 2.60None
Male accessory glands2 ± 10 of 4 2.60None
Virgin spermatheca0 ± 00 of 4 0.71None
Mated spermatheca0 ± 00 of 4 0.85None
Adult carcass1 ± 00 of 4 1.40None
Larval CNS2 ± 20 of 4 3.03None
Larval Salivary gland2 ± 10 of 4 2.76None
Larval midgut0 ± 00 of 4 0.94None
Larval tubule0 ± 00 of 4 0.70None
Larval hindgut0 ± 00 of 4 0.53None
Larval fat body0 ± 00 of 4 0.90None
Larval trachea0 ± 00 of 4 0.56None
Larval carcass0 ± 00 of 4 0.88None
S2 cells (growing)0 ± 00 of 4 0.56None
Whole fly0 ± 00 of 4

Looking for FBgn0030841. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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