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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030847 through 18771 annotations produced 1 hits



(CG12991):

Annotation Number : CG12991
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030847
Gbrowse : chrX:17473890-17492995 (+) // 100.0 //
Probeset : 1635980_s_at
Accessions : protein= NP_573223; /// NP_728086;, nucleotide= NM_132995; /// NM_167571;
FlyMine data for FBgn0030847.
BDGP gene expression has embryonic in situ data for CG12991: 6 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain323 ± 34 of 4 3.00Up
Head299 ± 74 of 4 2.80Up
Eye504 ± 334 of 4 4.68Up
Thoracicoabdominal ganglion283 ± 144 of 4 2.60Up
Salivary gland658 ± 244 of 4 6.12Up
Crop433 ± 154 of 4 4.00Up
Midgut293 ± 34 of 4 2.70Up
Tubule190 ± 164 of 4 1.80Up
Hindgut515 ± 64 of 4 4.80Up
Heart45 ± 64 of 4 0.43Down
Fat body33 ± 74 of 4 0.31Down
Ovary58 ± 04 of 4 0.50Down
Testis105 ± 74 of 4 1.00None
Male accessory glands92 ± 84 of 4 0.90None
Virgin spermatheca223 ± 74 of 4 2.08Up
Mated spermatheca331 ± 504 of 4 3.08Up
Adult carcass165 ± 114 of 4 1.50Up
Larval CNS220 ± 104 of 4 2.04Up
Larval Salivary gland196 ± 34 of 4 1.82Up
Larval midgut352 ± 404 of 4 3.28Up
Larval tubule210 ± 124 of 4 2.00Up
Larval hindgut472 ± 14 of 4 4.39Up
Larval fat body28 ± 63 of 4 0.30Down
Larval trachea291 ± 284 of 4 2.71Up
Larval carcass350 ± 334 of 4 3.26Up
S2 cells (growing)2 ± 00 of 4 0.03Down
Whole fly107 ± 64 of 4

Looking for FBgn0030847. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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