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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030859 through 18771 annotations produced 1 hits



(CG12990):

Annotation Number : CG12990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030859
Gbrowse : chrX:17563240-17565921 (-) // 100.0 //
Probeset : 1623148_at
Accessions : protein= NP_573233;, nucleotide= NM_133005;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0030859.
BDGP gene expression has embryonic in situ data for CG12990: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030859 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye4 00 of 4 0.03Down
Thoracicoabdominal ganglion6 20 of 4 0.00Down
Salivary gland18 23 of 4 0.11Down
Crop6 10 of 4 0.00Down
Midgut9 10 of 4 0.10Down
Tubule6 00 of 4 0.00Down
Hindgut2881 744 of 417.60Up
Heart6 01 of 4 0.04Down
Fat body13 33 of 4 0.08Down
Ovary4 00 of 4 0.00Down
Testis5 02 of 4 0.00Down
Male accessory glands6 11 of 4 0.00Down
Virgin spermatheca7 12 of 4 0.05Down
Mated spermatheca9 01 of 4 0.06Down
Adult carcass33 154 of 4 0.20Down
Larval CNS7 22 of 4 0.05Down
Larval Salivary gland10 11 of 4 0.06Down
Larval midgut8 20 of 4 0.05Down
Larval tubule5 10 of 4 0.00Down
Larval hindgut4 10 of 4 0.03Down
Larval fat body6 10 of 4 0.00Down
Larval trachea4 42 of 4 0.03Down
Larval carcass7 01 of 4 0.04Down
S2 cells (growing)4 00 of 4 0.02Down
Whole fly164 144 of 4

Looking for FBgn0030859. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime