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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030863 through 18771 annotations produced 1 hits



(CG8188):

Annotation Number : CG8188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030863
Gbrowse : chrX:17595048-17596994 (-) // 100.0 //
Probeset : 1629972_at
Accessions : protein= NP_001033852; /// NP_573237;, nucleotide= NM_001038763; /// NM_133009;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity //
FlyMine data for FBgn0030863.
Homophila reports that CG8188 is a close match (6e-11) to human gene RAD6A;UBE2A (NP_861442), a gene associated with Mental retardation, X-linked syndromic (3).
BioGrid reports that CG8188 interacts with CG3166 .
VDRC has 1 RNAi stocks for FBgn0030863 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain150 ± 64 of 4 2.30Up
Head42 ± 84 of 4 0.60None
Eye31 ± 24 of 4 0.47Down
Thoracicoabdominal ganglion59 ± 114 of 4 0.90None
Salivary gland27 ± 24 of 4 0.41Down
Crop36 ± 34 of 4 0.60Down
Midgut37 ± 24 of 4 0.60Down
Tubule10 ± 10 of 4 0.20Down
Hindgut37 ± 14 of 4 0.60Down
Heart19 ± 04 of 4 0.30Down
Fat body19 ± 52 of 4 0.29Down
Ovary104 ± 54 of 4 1.60Up
Testis122 ± 64 of 4 1.80Up
Male accessory glands73 ± 74 of 4 1.10None
Virgin spermatheca8 ± 10 of 4 0.13Down
Mated spermatheca11 ± 22 of 4 0.18Down
Adult carcass35 ± 33 of 4 0.50Down
Larval CNS91 ± 164 of 4 1.38None
Larval Salivary gland19 ± 34 of 4 0.30Down
Larval midgut11 ± 20 of 4 0.17Down
Larval tubule33 ± 14 of 4 0.50Down
Larval hindgut19 ± 14 of 4 0.29Down
Larval fat body38 ± 44 of 4 0.60Down
Larval trachea17 ± 24 of 4 0.26Down
Larval carcass20 ± 14 of 4 0.31Down
S2 cells (growing)201 ± 54 of 4 3.04Up
Whole fly66 ± 84 of 4

Looking for FBgn0030863. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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