Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030869 through 18771 annotations produced 1 hits



Suppressor of Cytokine Signaling at 16E (Socs16D):

Annotation Number : CG8146
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030869
Gbrowse : chrX:17716359-17720026 (-) // 100.0 //
Probeset : 1636122_at
Accessions : protein= NP_523390;, nucleotide= NM_078666;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0030869.
BDGP gene expression has embryonic in situ data for Socs16D: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0030869 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain111 ± 34 of 4 1.80Up
Head53 ± 34 of 4 0.90None
Eye174 ± 44 of 4 2.87Up
Thoracicoabdominal ganglion108 ± 24 of 4 1.80Up
Salivary gland66 ± 64 of 4 1.09None
Crop76 ± 44 of 4 1.30Up
Midgut59 ± 24 of 4 1.00None
Tubule102 ± 44 of 4 1.70Up
Hindgut73 ± 24 of 4 1.20None
Heart117 ± 64 of 4 1.93Up
Fat body80 ± 64 of 4 1.33Up
Ovary90 ± 54 of 4 1.50Up
Testis24 ± 14 of 4 0.40Down
Male accessory glands42 ± 44 of 4 0.70Down
Virgin spermatheca71 ± 34 of 4 1.17None
Mated spermatheca79 ± 64 of 4 1.31None
Adult carcass86 ± 154 of 4 1.40None
Larval CNS79 ± 84 of 4 1.31Up
Larval Salivary gland60 ± 34 of 4 0.99None
Larval midgut81 ± 34 of 4 1.34Up
Larval tubule93 ± 34 of 4 1.50Up
Larval hindgut59 ± 34 of 4 0.98None
Larval fat body46 ± 34 of 4 0.80Down
Larval trachea91 ± 64 of 4 1.50Up
Larval carcass54 ± 44 of 4 0.90None
S2 cells (growing)44 ± 34 of 4 0.73Down
Whole fly60 ± 44 of 4

Looking for FBgn0030869. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime