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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030873 through 18771 annotations produced 1 hits



(CG15814):

Annotation Number : CG15814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030873
Gbrowse : chrX:17742141-17744396 (-) // 100.0 //
Probeset : 1624222_s_at
Accessions : protein= NP_573247; /// NP_728098; /// NP_728099; /// NP_728100;, nucleotide= NM_133019; /// NM_167577; /// NM_167578; /// NM_167579;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from elect
FlyMine data for FBgn0030873.
BDGP gene expression has embryonic in situ data for CG15814: 12 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0030873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain352 ± 124 of 4 1.60Up
Head193 ± 104 of 4 0.90None
Eye254 ± 84 of 4 1.13None
Thoracicoabdominal ganglion237 ± 64 of 4 1.10None
Salivary gland984 ± 244 of 4 4.39Up
Crop269 ± 54 of 4 1.20None
Midgut544 ± 54 of 4 2.40Up
Tubule523 ± 114 of 4 2.30Up
Hindgut381 ± 34 of 4 1.70Up
Heart181 ± 44 of 4 0.81None
Fat body190 ± 204 of 4 0.85None
Ovary360 ± 74 of 4 1.60Up
Testis121 ± 34 of 4 0.50Down
Male accessory glands370 ± 44 of 4 1.70Up
Virgin spermatheca112 ± 84 of 4 0.50Down
Mated spermatheca121 ± 64 of 4 0.54Down
Adult carcass155 ± 64 of 4 0.70None
Larval CNS209 ± 74 of 4 0.94None
Larval Salivary gland1291 ± 484 of 4 5.76Up
Larval midgut503 ± 204 of 4 2.24Up
Larval tubule579 ± 44 of 4 2.60Up
Larval hindgut382 ± 44 of 4 1.71Up
Larval fat body144 ± 54 of 4 0.60Down
Larval trachea188 ± 84 of 4 0.84None
Larval carcass175 ± 44 of 4 0.78None
S2 cells (growing)228 ± 64 of 4 1.02None
Whole fly224 ± 224 of 4

Looking for FBgn0030873. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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