FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030876 through 18771 annotations produced 1 hits

(CG6762):

Annotation Number : CG6762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030876
Gbrowse : chrX:17751202-17752297 (+) // 100.0 //
Probeset : 1641455_at
Accessions : protein= NP_573250;, nucleotide= NM_133022;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0030876.
VDRC has 1 RNAi stocks for FBgn0030876 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	75 ± 4	4 of 4	2.20	Up
Head	58 ± 4	4 of 4	1.70	Up
Eye	131 ± 7	4 of 4	3.89	Up
Thoracicoabdominal ganglion	50 ± 3	4 of 4	1.50	Up
Salivary gland	125 ± 5	4 of 4	3.71	Up
Crop	75 ± 4	4 of 4	2.20	Up
Midgut	83 ± 2	4 of 4	2.50	Up
Tubule	48 ± 0	4 of 4	1.40	Up
Hindgut	72 ± 3	4 of 4	2.10	Up
Heart	145 ± 10	4 of 4	4.29	Up
Fat body	47 ± 10	4 of 4	1.39	None
Ovary	19 ± 2	4 of 4	0.60	Down
Testis	11 ± 0	4 of 4	0.30	Down
Male accessory glands	65 ± 7	4 of 4	1.90	Up
Virgin spermatheca	13 ± 1	2 of 4	0.40	Down
Mated spermatheca	14 ± 2	0 of 4	0.41	Down
Adult carcass	67 ± 3	4 of 4	2.00	Up
Larval CNS	24 ± 2	4 of 4	0.74	Down
Larval Salivary gland	65 ± 1	4 of 4	1.93	Up
Larval midgut	167 ± 33	4 of 4	4.96	Up
Larval tubule	407 ± 22	4 of 4	12.00	Up
Larval hindgut	60 ± 5	4 of 4	1.80	Up
Larval fat body	3627 ± 512	4 of 4	107.20	Up
Larval trachea	104 ± 9	4 of 4	3.07	Up
Larval carcass	496 ± 149	4 of 4	14.67	None
S2 cells (growing)	34 ± 3	4 of 4	1.01	None
Whole fly	33 ± 2	4 of 4

Looking for FBgn0030876. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720