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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030880 through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG6788):

Annotation Number : CG6788
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030880 /// FBgn0052496
Gbrowse : chrX:17782209-17783437 (+) // 100.0 // /// chrX:17792669-17793592 (+) // 73.48 // /// chrUextra:1135893-1136502 (+) // 52.96 // /// chrUextra:171012-171927 (-) // 72.78 //
Probeset : 1633167_s_at
Accessions : protein= NP_573254;, nucleotide= NM_133026;
Pathway : 0005615 // extracellular space // inferred from electronic annotation
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0030880 /// FBgn0052496.
Homophila reports that CG6788 is a close match (5e-24) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.60None
Head2 00 of 4 0.20None
Eye4 10 of 4 0.50None
Thoracicoabdominal ganglion4 10 of 4 0.50None
Salivary gland8 20 of 4 1.03None
Crop6 20 of 4 0.80None
Midgut6 10 of 4 0.70None
Tubule5 10 of 4 0.70Down
Hindgut4 10 of 4 0.60None
Heart2 10 of 4 0.35None
Fat body4 50 of 4 0.57None
Ovary2 00 of 4 0.30None
Testis9 21 of 4 1.20None
Male accessory glands2 00 of 4 0.30None
Virgin spermatheca8 10 of 4 0.96None
Mated spermatheca7 10 of 4 0.89None
Adult carcass6 30 of 4 0.80None
Larval CNS6 10 of 4 0.82None
Larval Salivary gland7 10 of 4 0.89None
Larval midgut6 11 of 4 0.82None
Larval tubule3 10 of 4 0.40None
Larval hindgut2 00 of 4 0.29None
Larval fat body27 61 of 4 3.30None
Larval trachea6 40 of 4 0.72None
Larval carcass12 31 of 4 1.47None
S2 cells (growing)3 10 of 4 0.44None
Whole fly8 41 of 4

Looking for FBgn0030880. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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