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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030881 through 18771 annotations produced 1 hits


Annotation Number : CG12985
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030881
Gbrowse : chrX:17777840-17779117 (+) // 100.0 //
Probeset : 1633064_at
Accessions : protein= NP_573255;, nucleotide= NM_133027;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030881.
BioGrid reports that CG12985 interacts with CG13247 CG1455 CG14840 CG17564 CG5081 CG7281 CG8134 CG9124 CG12985 CG13001 CG13083 CG13293 CG14044 CG1474 CG15109 CG15218 CG15472 CG1591 CG17009 CG17230 CG17265 CG17785 CG2213 CG2830 CG2925 CG3085 CG3151 CG31919 CG32226 CG3922 CG4276 CG4394 CG5733 CG6156 CG6477 CG7352 CG7518 CG8301 CG8609 CG9188 CG9640 CG9665 .
VDRC has 2 RNAi stocks for FBgn0030881 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head6 10 of 4 0.80None
Eye4 10 of 4 0.52None
Thoracicoabdominal ganglion2 00 of 4 0.40Down
Salivary gland16 10 of 4 2.07Up
Crop13 21 of 4 1.80None
Midgut3 10 of 4 0.50None
Tubule4 10 of 4 0.50Down
Hindgut10 10 of 4 1.30None
Heart6 10 of 4 0.81None
Fat body5 40 of 4 0.69None
Ovary1 00 of 4 0.20Down
Testis46 24 of 4 5.90Up
Male accessory glands10 20 of 4 1.30None
Virgin spermatheca8 10 of 4 1.03None
Mated spermatheca5 10 of 4 0.72None
Adult carcass3 00 of 4 0.40None
Larval CNS2 40 of 4 0.38None
Larval Salivary gland6 20 of 4 0.82None
Larval midgut9 30 of 4 1.17None
Larval tubule2 00 of 4 0.30Down
Larval hindgut3 10 of 4 0.38None
Larval fat body16 71 of 4 2.10None
Larval trachea2 20 of 4 0.38None
Larval carcass4 10 of 4 0.57None
S2 cells (growing)3 10 of 4 0.38None
Whole fly7 10 of 4

Looking for FBgn0030881. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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