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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030882 through 18771 annotations produced 2 hits



/// Glutathione Synthetase (CG32495 /// GS):

Annotation Number : CG32495
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030882 /// FBgn0052495
Gbrowse : chrUextra:403420-404691 (+) // 60.1 // /// chrX:17783616-17792488 (+) // 100.0 // /// chrX:17793771-17799910 (+) // 100.0 // /// chrUextra:169743-170833 (-) // 40.09 //
Probeset : 1633036_s_at
Accessions : protein= NP_001162782; /// NP_001162783; /// NP_001162784; /// NP_001162786; /// NP_001162787; /// NP_573256; /// NP_728116; /// NP_728117; /// NP_728118; /// NP_788925; /// NP_788926; /// NP_788927;, nucleotide= NM_001169311; /// NM_001169312; /// NM_001169313; /// NM_001169315; /// NM_001169316; /// NM_133028; /// NM_167589; /// NM_167590; /// NM_167591; /// NM_176752; /// NM_176753; /// NM_176754;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004363 // glutathione synthase activity // inf
FlyMine data for FBgn0030882 /// FBgn0052495.
Homophila reports that CG32495 is a close match (3e-62) to human gene GSHS;GSS (NP_000169), a gene associated with Glutathione synthetase deficiency, 266130 (3);Hemolytic anemia due to glutathione synthetase deficiency, 231900 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain192 ± 144 of 4 0.90None
Head294 ± 84 of 4 1.30None
Eye471 ± 184 of 4 2.16Up
Thoracicoabdominal ganglion111 ± 64 of 4 0.50Down
Salivary gland1378 ± 874 of 4 6.31Up
Crop137 ± 84 of 4 0.60None
Midgut623 ± 354 of 4 2.90Up
Tubule1997 ± 1324 of 4 9.10Up
Hindgut317 ± 194 of 4 1.50None
Heart175 ± 84 of 4 0.80None
Fat body160 ± 444 of 4 0.74None
Ovary129 ± 34 of 4 0.60None
Testis263 ± 224 of 4 1.20None
Male accessory glands118 ± 44 of 4 0.50None
Virgin spermatheca110 ± 72 of 4 0.51Down
Mated spermatheca95 ± 23 of 4 0.44Down
Adult carcass203 ± 164 of 4 0.90None
Larval CNS109 ± 194 of 4 0.50Down
Larval Salivary gland373 ± 84 of 4 1.71Up
Larval midgut1028 ± 224 of 4 4.71Up
Larval tubule771 ± 634 of 4 3.50Up
Larval hindgut238 ± 94 of 4 1.09None
Larval fat body524 ± 504 of 4 2.40Up
Larval trachea182 ± 144 of 4 0.84None
Larval carcass105 ± 94 of 4 0.48Down
S2 cells (growing)298 ± 44 of 4 1.37None
Whole fly218 ± 344 of 4



/// Glutathione Synthetase (CG32495 /// GS):

Annotation Number : CG6835
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030882 /// FBgn0052495
Gbrowse : chrX:17794013-17796797 (+) // 100.0 // /// chrX:17783858-17786642 (+) // 100.0 // /// chrUextra:167806-170591 (-) // 100.0 //
Probeset : 1627321_x_at
Accessions : protein= NP_001162782; /// NP_001162783; /// NP_001162784; /// NP_001162786; /// NP_001162787; /// NP_573256; /// NP_728116; /// NP_728117; /// NP_728118; /// NP_788925; /// NP_788926; /// NP_788927;, nucleotide= NM_001169311; /// NM_001169312; /// NM_001169313; /// NM_001169315; /// NM_001169316; /// NM_133028; /// NM_167589; /// NM_167590; /// NM_167591; /// NM_176752; /// NM_176753; /// NM_176754;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004363 // glutathione synthase activity // inf
FlyMine data for FBgn0030882 /// FBgn0052495.
Homophila reports that CG6835 is a close match (2e-13) to human gene GSHS;GSS (NP_000169), a gene associated with Glutathione synthetase deficiency, 266130 (3);Hemolytic anemia due to glutathione synthetase deficiency, 231900 (3).
BioGrid reports that CG6835 interacts with CG7238 CG8910 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 22 of 4 0.60None
Head14 ± 22 of 4 1.30None
Eye32 ± 44 of 4 3.03Up
Thoracicoabdominal ganglion10 ± 12 of 4 0.90None
Salivary gland239 ± 194 of 422.15Up
Crop10 ± 31 of 4 1.00None
Midgut67 ± 34 of 4 6.20Up
Tubule30 ± 13 of 4 2.80Up
Hindgut10 ± 12 of 4 1.00None
Heart5 ± 10 of 4 0.52None
Fat body5 ± 10 of 4 0.49None
Ovary3 ± 00 of 4 0.30None
Testis7 ± 13 of 4 0.70None
Male accessory glands40 ± 34 of 4 3.80Up
Virgin spermatheca3 ± 10 of 4 0.30None
Mated spermatheca4 ± 10 of 4 0.40None
Adult carcass10 ± 20 of 4 1.00None
Larval CNS6 ± 33 of 4 0.57None
Larval Salivary gland37 ± 24 of 4 3.50Up
Larval midgut169 ± 204 of 415.64Up
Larval tubule10 ± 02 of 4 1.00None
Larval hindgut8 ± 13 of 4 0.74None
Larval fat body35 ± 24 of 4 3.30Up
Larval trachea6 ± 21 of 4 0.56None
Larval carcass7 ± 10 of 4 0.72None
S2 cells (growing)24 ± 14 of 4 2.26Up
Whole fly10 ± 22 of 4

Looking for FBgn0030882. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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