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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030887 through 18771 annotations produced 1 hits


Annotation Number : CG6867
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030887
Gbrowse : chrX:17917903-17922294 (+) // 100.0 //
Probeset : 1624485_at
Accessions : protein= NP_573262;, nucleotide= NM_133034;
FlyMine data for FBgn0030887.
Homophila reports that CG6867 is a close match (8e-11) to human gene COL4A3 (NP_112734), a gene associated with Alport syndrome, autosomal recessive, 203780 (3);Hematuria, benign familial, 141200 (3).
VDRC has 1 RNAi stocks for FBgn0030887 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain286 74 of 4 7.70Up
Head71 34 of 4 1.90Up
Eye25 24 of 4 0.68Down
Thoracicoabdominal ganglion160 54 of 4 4.30Up
Salivary gland9 21 of 4 0.27Down
Crop46 24 of 4 1.30Up
Midgut7 20 of 4 0.20Down
Tubule30 191 of 4 0.80None
Hindgut1673 604 of 445.30Up
Heart52 54 of 4 1.43None
Fat body9 20 of 4 0.26Down
Ovary5 00 of 4 0.10Down
Testis13 01 of 4 0.40Down
Male accessory glands11 10 of 4 0.30Down
Virgin spermatheca7 20 of 4 0.21Down
Mated spermatheca4 00 of 4 0.12Down
Adult carcass38 14 of 4 1.00None
Larval CNS141 114 of 4 3.84Up
Larval Salivary gland5 20 of 4 0.14Down
Larval midgut23 24 of 4 0.64Down
Larval tubule7 10 of 4 0.20Down
Larval hindgut45 24 of 4 1.24None
Larval fat body7 20 of 4 0.20Down
Larval trachea14 63 of 4 0.40Down
Larval carcass150 184 of 4 4.08Up
S2 cells (growing)38 04 of 4 1.03None
Whole fly36 24 of 4

Looking for FBgn0030887. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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