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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030892 through 18771 annotations produced 1 hits



(CG7206):

Annotation Number : CG7206
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030892
Gbrowse : chrX:17982756-17984542 (-) // 100.0 //
Probeset : 1634663_at
Accessions : protein= NP_573266; /// NP_996499;, nucleotide= NM_133038; /// NM_206776;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030892.
BDGP gene expression has embryonic in situ data for CG7206: 4 pix of staining in 1 body parts.
BioGrid reports that CG7206 interacts with CG9170 CG9060 .
VDRC has 5 RNAi stocks for FBgn0030892 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain183 ± 104 of 4 1.60Up
Head76 ± 44 of 4 0.70Down
Eye132 ± 24 of 4 1.15Up
Thoracicoabdominal ganglion152 ± 64 of 4 1.30Up
Salivary gland123 ± 84 of 4 1.07None
Crop113 ± 44 of 4 1.00None
Midgut121 ± 74 of 4 1.10None
Tubule118 ± 84 of 4 1.00None
Hindgut105 ± 54 of 4 0.90None
Heart73 ± 74 of 4 0.64Down
Fat body63 ± 64 of 4 0.55Down
Ovary211 ± 34 of 4 1.80Up
Testis181 ± 34 of 4 1.60Up
Male accessory glands99 ± 104 of 4 0.90None
Virgin spermatheca90 ± 44 of 4 0.78Down
Mated spermatheca96 ± 94 of 4 0.84None
Adult carcass78 ± 54 of 4 0.70Down
Larval CNS175 ± 234 of 4 1.52Up
Larval Salivary gland173 ± 104 of 4 1.50Up
Larval midgut72 ± 44 of 4 0.63Down
Larval tubule111 ± 14 of 4 1.00None
Larval hindgut77 ± 24 of 4 0.67Down
Larval fat body132 ± 134 of 4 1.10None
Larval trachea151 ± 134 of 4 1.32Up
Larval carcass69 ± 54 of 4 0.61Down
S2 cells (growing)182 ± 44 of 4 1.59Up
Whole fly115 ± 14 of 4

Looking for FBgn0030892. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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