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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030894 through 18771 annotations produced 1 hits



(CG7192):

Annotation Number : CG7192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030894
Gbrowse : chrX:17991866-17995367 (-) // 100.0 //
Probeset : 1641445_s_at
Accessions : protein= NP_573268; /// NP_728135;, nucleotide= NM_133040; /// NM_167602;
FlyMine data for FBgn0030894.
TRiP has 1 RNAi stocks for FBgn0030894 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030894 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 14 of 4 0.60Down
Head57 74 of 4 0.40Down
Eye33 24 of 4 0.21Down
Thoracicoabdominal ganglion78 64 of 4 0.50Down
Salivary gland93 54 of 4 0.59Down
Crop85 24 of 4 0.50Down
Midgut91 44 of 4 0.60Down
Tubule143 24 of 4 0.90Down
Hindgut83 34 of 4 0.50Down
Heart25 24 of 4 0.16Down
Fat body41 64 of 4 0.26Down
Ovary353 114 of 4 2.20Up
Testis98 24 of 4 0.60Down
Male accessory glands116 114 of 4 0.70Down
Virgin spermatheca43 24 of 4 0.28Down
Mated spermatheca37 04 of 4 0.24Down
Adult carcass50 34 of 4 0.30Down
Larval CNS114 24 of 4 0.72Down
Larval Salivary gland27 24 of 4 0.18Down
Larval midgut77 44 of 4 0.49Down
Larval tubule252 24 of 4 1.60Up
Larval hindgut163 54 of 4 1.03None
Larval fat body107 74 of 4 0.70Down
Larval trachea84 14 of 4 0.53Down
Larval carcass106 114 of 4 0.67Down
S2 cells (growing)423 124 of 4 2.67Up
Whole fly158 114 of 4

Looking for FBgn0030894. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime