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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030898 through 18771 annotations produced 1 hits



Andorra (Andorra):

Annotation Number : CG12611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030898
Gbrowse : chrX:18072717-18073443 (-) // 100.0 //
Probeset : 1632811_at
Accessions : protein= NP_573272;, nucleotide= NM_133044;
FlyMine data for FBgn0030898.
VDRC has 3 RNAi stocks for FBgn0030898 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head5 ± 11 of 4 0.40Down
Eye5 ± 21 of 4 0.37Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.30Down
Salivary gland6 ± 30 of 4 0.44None
Crop8 ± 10 of 4 0.60Down
Midgut14 ± 20 of 4 1.00None
Tubule7 ± 10 of 4 0.50Down
Hindgut10 ± 10 of 4 0.70Down
Heart3 ± 00 of 4 0.23Down
Fat body2 ± 10 of 4 0.19Down
Ovary3 ± 00 of 4 0.30Down
Testis148 ± 94 of 410.30Up
Male accessory glands3 ± 10 of 4 0.20Down
Virgin spermatheca7 ± 00 of 4 0.53Down
Mated spermatheca3 ± 10 of 4 0.25Down
Adult carcass10 ± 20 of 4 0.70None
Larval CNS5 ± 10 of 4 0.35Down
Larval Salivary gland7 ± 10 of 4 0.50Down
Larval midgut8 ± 30 of 4 0.61None
Larval tubule8 ± 10 of 4 0.60Down
Larval hindgut5 ± 10 of 4 0.34Down
Larval fat body24 ± 113 of 4 1.70None
Larval trachea8 ± 10 of 4 0.56Down
Larval carcass5 ± 10 of 4 0.36Down
S2 cells (growing)2 ± 00 of 4 0.18Down
Whole fly14 ± 04 of 4

Looking for FBgn0030898. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime