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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030899 through 18771 annotations produced 1 hits



HES-related (Her):

Annotation Number : CG5927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030899
Gbrowse : chrX:18098575-18099153 (-) // 100.0 //
Probeset : 1625246_at
Accessions : protein= NP_525094;, nucleotide= NM_080355;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0030899.
BioGrid reports that CG5927 interacts with CG8384 .
TRiP has 1 RNAi stocks for FBgn0030899 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030899 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye0 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland8 ± 30 of 4 0.47None
Crop1 ± 00 of 4 0.10Down
Midgut2 ± 00 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart2 ± 10 of 4 0.16Down
Fat body5 ± 10 of 4 0.28Down
Ovary20 ± 24 of 4 1.20None
Testis4 ± 11 of 4 0.30Down
Male accessory glands6 ± 20 of 4 0.30Down
Virgin spermatheca6 ± 10 of 4 0.38Down
Mated spermatheca6 ± 20 of 4 0.38Down
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland4 ± 20 of 4 0.26Down
Larval midgut5 ± 20 of 4 0.30Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.08Down
Larval fat body5 ± 10 of 4 0.30Down
Larval trachea3 ± 40 of 4 0.19Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)1 ± 00 of 4 0.11Down
Whole fly17 ± 24 of 4

Looking for FBgn0030899. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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