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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030905 through 18771 annotations produced 3 hits



(CG15059):

Annotation Number : CG15059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030905
Gbrowse : chrX:18152974-18153481 (-) // 100.0 //
Probeset : 1638767_at
Accessions : protein= NP_573278; /// NP_728153;, nucleotide= NM_133050; /// NM_167611;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030905.
BioGrid reports that CG15059 interacts with CG5692 .
VDRC has 3 RNAi stocks for FBgn0030905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 1.10None
Head3 ± 10 of 4 1.30None
Eye1 ± 00 of 4 0.59None
Thoracicoabdominal ganglion3 ± 10 of 4 1.20None
Salivary gland17 ± 20 of 4 6.40Up
Crop6 ± 20 of 4 2.60None
Midgut5 ± 20 of 4 2.10None
Tubule5 ± 00 of 4 1.90Up
Hindgut5 ± 10 of 4 1.90None
Heart3 ± 10 of 4 1.19None
Fat body2 ± 10 of 4 0.85None
Ovary2 ± 10 of 4 1.10None
Testis6 ± 02 of 4 2.30Up
Male accessory glands2 ± 00 of 4 0.70None
Virgin spermatheca4 ± 00 of 4 1.53None
Mated spermatheca4 ± 10 of 4 1.67None
Adult carcass6 ± 30 of 4 2.40None
Larval CNS4 ± 31 of 4 1.64None
Larval Salivary gland6 ± 10 of 4 2.47None
Larval midgut7 ± 20 of 4 2.69None
Larval tubule4 ± 10 of 4 1.60None
Larval hindgut5 ± 00 of 4 1.97Up
Larval fat body11 ± 20 of 4 4.20Up
Larval trachea7 ± 10 of 4 2.75Up
Larval carcass10 ± 00 of 4 3.75Up
S2 cells (growing)4 ± 10 of 4 1.63None
Whole fly2 ± 00 of 4



(CG15059):

Annotation Number : CG15059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030905
Gbrowse : chrX:18152866-18153489 (-) // 100.0 //
Probeset : 1638769_a_at
Accessions : protein= NP_573278; /// NP_728153;, nucleotide= NM_133050; /// NM_167611;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030905.
BioGrid reports that CG15059 interacts with CG5692 .
VDRC has 3 RNAi stocks for FBgn0030905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head2 ± 10 of 4 0.30None
Eye2 ± 10 of 4 0.30None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10None
Salivary gland1 ± 00 of 4 0.25None
Crop1 ± 00 of 4 0.10None
Midgut0 ± 00 of 4 0.10None
Tubule1 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.20None
Heart1 ± 00 of 4 0.23None
Fat body2 ± 00 of 4 0.35None
Ovary0 ± 00 of 4 0.10Down
Testis85 ± 54 of 412.70Up
Male accessory glands4 ± 20 of 4 0.60None
Virgin spermatheca0 ± 00 of 4 0.11Down
Mated spermatheca1 ± 00 of 4 0.21None
Adult carcass1 ± 00 of 4 0.20None
Larval CNS0 ± 00 of 4 0.14None
Larval Salivary gland2 ± 10 of 4 0.41None
Larval midgut1 ± 00 of 4 0.20None
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.11Down
Larval fat body10 ± 51 of 4 1.60None
Larval trachea14 ± 23 of 4 2.16Up
Larval carcass1 ± 00 of 4 0.28None
S2 cells (growing)0 ± 00 of 4 0.13None
Whole fly6 ± 10 of 4



(CG15059):

Annotation Number : CG15059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030905
Gbrowse : chrX:18152866-18153489 (-) // 100.0 //
Probeset : 1628534_at
Accessions : protein= NP_573278; /// NP_728153;, nucleotide= NM_133050; /// NM_167611;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030905.
BioGrid reports that CG15059 interacts with CG5692 .
VDRC has 3 RNAi stocks for FBgn0030905 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10None
Head1 ± 00 of 4 0.20None
Eye1 ± 00 of 4 0.18None
Thoracicoabdominal ganglion3 ± 01 of 4 0.40None
Salivary gland5 ± 20 of 4 0.52None
Crop2 ± 10 of 4 0.20None
Midgut3 ± 10 of 4 0.30None
Tubule3 ± 00 of 4 0.30Down
Hindgut1 ± 00 of 4 0.20None
Heart0 ± 00 of 4 0.03Down
Fat body2 ± 20 of 4 0.27None
Ovary2 ± 00 of 4 0.20None
Testis100 ± 44 of 410.40Up
Male accessory glands5 ± 20 of 4 0.50None
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca1 ± 00 of 4 0.19None
Adult carcass2 ± 11 of 4 0.30None
Larval CNS2 ± 10 of 4 0.22None
Larval Salivary gland3 ± 10 of 4 0.31None
Larval midgut3 ± 10 of 4 0.31None
Larval tubule2 ± 00 of 4 0.30None
Larval hindgut2 ± 00 of 4 0.21None
Larval fat body8 ± 21 of 4 0.90None
Larval trachea5 ± 32 of 4 0.56None
Larval carcass2 ± 00 of 4 0.29None
S2 cells (growing)1 ± 00 of 4 0.19None
Whole fly9 ± 23 of 4

Looking for FBgn0030905. 3 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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