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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030912 through 18771 annotations produced 1 hits



(CG6023):

Annotation Number : CG6023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030912
Gbrowse : chrX:18208155-18215198 (-) // 100.0 //
Probeset : 1640327_at
Accessions : protein= NP_573285; /// NP_996503;, nucleotide= NM_133057; /// NM_206780;
FlyMine data for FBgn0030912.
BDGP gene expression has embryonic in situ data for CG6023: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030912 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain47 ± 24 of 4 1.00None
Head53 ± 44 of 4 1.10None
Eye79 ± 34 of 4 1.68Up
Thoracicoabdominal ganglion43 ± 34 of 4 0.90None
Salivary gland213 ± 74 of 4 4.49Up
Crop68 ± 14 of 4 1.40Up
Midgut34 ± 14 of 4 0.70Down
Tubule70 ± 84 of 4 1.50Up
Hindgut122 ± 64 of 4 2.60Up
Heart11 ± 22 of 4 0.25Down
Fat body13 ± 22 of 4 0.28Down
Ovary79 ± 34 of 4 1.70Up
Testis7 ± 02 of 4 0.20Down
Male accessory glands43 ± 14 of 4 0.90None
Virgin spermatheca22 ± 14 of 4 0.46Down
Mated spermatheca30 ± 44 of 4 0.64Down
Adult carcass46 ± 24 of 4 1.00None
Larval CNS18 ± 54 of 4 0.39Down
Larval Salivary gland54 ± 44 of 4 1.16None
Larval midgut66 ± 24 of 4 1.40Up
Larval tubule36 ± 24 of 4 0.80Down
Larval hindgut106 ± 34 of 4 2.23Up
Larval fat body4 ± 10 of 4 0.10Down
Larval trachea59 ± 114 of 4 1.26None
Larval carcass71 ± 54 of 4 1.51Up
S2 cells (growing)3 ± 00 of 4 0.07Down
Whole fly47 ± 24 of 4

Looking for FBgn0030912. 1 entries matched from 18771, in 6 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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