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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030921 through 18771 annotations produced 1 hits



(CG6290):

Annotation Number : CG6290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030921
Gbrowse : chrX:18331536-18332269 (+) // 100.0 //
Probeset : 1630149_at
Accessions : protein= NP_573294;, nucleotide= NM_133066;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030921.
BDGP gene expression has embryonic in situ data for CG6290: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.10Down
Head152 194 of 4 4.80Up
Eye5 20 of 4 0.16Down
Thoracicoabdominal ganglion5 00 of 4 0.20Down
Salivary gland14 30 of 4 0.44Down
Crop4 10 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule7 00 of 4 0.20Down
Hindgut8 30 of 4 0.30Down
Heart0 00 of 4 0.02Down
Fat body9 10 of 4 0.30Down
Ovary2 00 of 4 0.10Down
Testis6 10 of 4 0.20Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca8 10 of 4 0.28Down
Mated spermatheca4 10 of 4 0.14Down
Adult carcass105 54 of 4 3.30Up
Larval CNS4 10 of 4 0.14Down
Larval Salivary gland5 20 of 4 0.18Down
Larval midgut8 10 of 4 0.27Down
Larval tubule3 00 of 4 0.10Down
Larval hindgut7 10 of 4 0.23Down
Larval fat body3 00 of 4 0.10Down
Larval trachea2 30 of 4 0.09Down
Larval carcass4 10 of 4 0.13Down
S2 cells (growing)4 00 of 4 0.14Down
Whole fly31 34 of 4

Looking for FBgn0030921. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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