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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030926 through 18771 annotations produced 1 hits



persephone (psh):

Annotation Number : CG6367
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030926
Gbrowse : chrX:18378514-18380954 (-) // 100.0 //
Probeset : 1636266_at
Accessions : protein= NP_573297;, nucleotide= NM_133069;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0030926.
BDGP gene expression has embryonic in situ data for psh: 4 pix of staining in 1 body parts.
Homophila reports that CG6367 is a close match (7e-11) to human gene EMSP1;KLK4;PRSS17 (NP_004908), a gene associated with Amelogenesis imperfecta, pigmented hypomaturation type, 204700 (3).
BioGrid reports that CG6367 interacts with CG1857 .
VDRC has 3 RNAi stocks for FBgn0030926 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.20Down
Head208 ± 94 of 4 5.50Up
Eye85 ± 94 of 4 2.24Up
Thoracicoabdominal ganglion5 ± 20 of 4 0.20Down
Salivary gland9 ± 31 of 4 0.24Down
Crop27 ± 24 of 4 0.70None
Midgut5 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut25 ± 44 of 4 0.70None
Heart149 ± 114 of 4 3.93Up
Fat body329 ± 344 of 4 8.63Up
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca108 ± 64 of 4 2.85Up
Mated spermatheca135 ± 124 of 4 3.55Up
Adult carcass208 ± 104 of 4 5.50Up
Larval CNS2 ± 00 of 4 0.07Down
Larval Salivary gland11 ± 10 of 4 0.29Down
Larval midgut2 ± 10 of 4 0.07Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut13 ± 21 of 4 0.35Down
Larval fat body311 ± 484 of 4 8.20Up
Larval trachea15 ± 64 of 4 0.40Down
Larval carcass28 ± 54 of 4 0.75None
S2 cells (growing)4 ± 10 of 4 0.11Down
Whole fly38 ± 44 of 4

Looking for FBgn0030926. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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