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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030928 through 18771 annotations produced 1 hits



(CG15044):

Annotation Number : CG15044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030928
Gbrowse : chrX:18385214-18386029 (-) // 100.0 //
Probeset : 1631801_at
Accessions : protein= NP_573299;, nucleotide= NM_133071;
FlyMine data for FBgn0030928.
BDGP gene expression has embryonic in situ data for CG15044: 9 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0030928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.00Down
Salivary gland5 ± 10 of 4 0.05Down
Crop3 ± 20 of 4 0.00Down
Midgut1031 ± 184 of 4 9.00Up
Tubule4 ± 10 of 4 0.00Down
Hindgut90 ± 54 of 4 0.80None
Heart1 ± 00 of 4 0.01Down
Fat body3 ± 10 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca1 ± 00 of 4 0.01Down
Adult carcass3 ± 10 of 4 0.00Down
Larval CNS4 ± 30 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut976 ± 744 of 4 8.54Up
Larval tubule59 ± 64 of 4 0.50Down
Larval hindgut369 ± 194 of 4 3.24Up
Larval fat body10 ± 30 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.02Down
Larval carcass0 ± 00 of 4 0.01Down
S2 cells (growing)2 ± 10 of 4 0.02Down
Whole fly114 ± 84 of 4

Looking for FBgn0030928. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime