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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030931 through 18771 annotations produced 1 hits



Rad51D (Rad51D):

Annotation Number : CG6318
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030931
Gbrowse : chrX:18394214-18394967 (+) // 100.0 //
Probeset : 1639035_at
Accessions : protein= NP_573302;, nucleotide= NM_133074;
Interpro : "0000150 // recombinase activity // inferred from sequence or structural similarity /// 0008094 // DNA-dependent ATPase
FlyMine data for FBgn0030931.
VDRC has 3 RNAi stocks for FBgn0030931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland1 ± 00 of 4 0.07Down
Crop0 ± 00 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule0 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.07Down
Fat body0 ± 00 of 4 0.03Down
Ovary40 ± 34 of 4 2.20Up
Testis0 ± 00 of 4 0.00Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.03Down
Adult carcass0 ± 00 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.11Down
Larval Salivary gland0 ± 00 of 4 0.05Down
Larval midgut0 ± 00 of 4 0.05Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.03Down
Larval fat body0 ± 00 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.05Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)3 ± 00 of 4 0.17Down
Whole fly18 ± 24 of 4

Looking for FBgn0030931. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime