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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030936 through 18771 annotations produced 1 hits



(CG6481):

Annotation Number : CG6481
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030936
Gbrowse : chrX:18415104-18416478 (-) // 100.0 //
Probeset : 1625585_at
Accessions : protein= NP_573307;, nucleotide= NM_133079;
FlyMine data for FBgn0030936.
VDRC has 3 RNAi stocks for FBgn0030936 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.05Down
Crop2 ± 00 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body1 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis923 ± 494 of 412.70Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.05Down
Adult carcass17 ± 30 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 10 of 4 0.03Down
Larval fat body85 ± 414 of 4 1.20None
Larval trachea2 ± 10 of 4 0.03Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)3 ± 10 of 4 0.05Down
Whole fly72 ± 34 of 4

Looking for FBgn0030936. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime