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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030941 through 18771 annotations produced 1 hits



Wengen (wgn):

Annotation Number : CG6531
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030941
Gbrowse : chrX:18518081-18528936 (-) // 100.0 //
Probeset : 1636274_at
Accessions : protein= NP_728186;, nucleotide= NM_167626;
Pathway : 0005887 // integral to plasma membrane // inferred from direct assay /// 0005887 // integral to plasma membrane // infer
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005031 // tumor necrosis factor receptor activi
FlyMine data for FBgn0030941.
BDGP gene expression has embryonic in situ data for wgn: 46 pix of staining in 25 body parts.
BioGrid reports that CG6531 interacts with CG12919 CG12919 .
VDRC has 1 RNAi stocks for FBgn0030941 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 44 of 4 2.00Up
Head239 124 of 4 2.30Up
Eye181 54 of 4 1.78Up
Thoracicoabdominal ganglion316 104 of 4 3.10Up
Salivary gland252 154 of 4 2.47Up
Crop1748 604 of 417.10Up
Midgut117 64 of 4 1.20None
Tubule65 34 of 4 0.60Down
Hindgut564 94 of 4 5.50Up
Heart527 304 of 4 5.17Up
Fat body53 134 of 4 0.53Down
Ovary50 24 of 4 0.50Down
Testis49 54 of 4 0.50Down
Male accessory glands162 84 of 4 1.60Up
Virgin spermatheca72 44 of 4 0.71Down
Mated spermatheca80 74 of 4 0.79None
Adult carcass281 194 of 4 2.80Up
Larval CNS102 64 of 4 1.00None
Larval Salivary gland72 54 of 4 0.71Down
Larval midgut123 84 of 4 1.21None
Larval tubule22 13 of 4 0.20Down
Larval hindgut403 114 of 4 3.95Up
Larval fat body37 34 of 4 0.40Down
Larval trachea186 154 of 4 1.83Up
Larval carcass277 224 of 4 2.72Up
S2 cells (growing)543 54 of 4 5.33Up
Whole fly102 54 of 4

Looking for FBgn0030941. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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