FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030944 through 18771 annotations produced 1 hits

(CG6617):

Annotation Number : CG6617
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030944
Gbrowse : chrX:18543426-18544473 (-) // 100.0 //
Probeset : 1632736_at
Accessions : protein= NP_573315;, nucleotide= NM_133087;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030944.
BDGP gene expression has embryonic in situ data for CG6617: 15 pix of staining in 8 body parts.
BioGrid reports that CG6617 interacts with CG7611 .
VDRC has 1 RNAi stocks for FBgn0030944 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	251 ± 4	4 of 4	1.40	Up
Head	188 ± 3	4 of 4	1.10	None
Eye	203 ± 8	4 of 4	1.15	None
Thoracicoabdominal ganglion	230 ± 5	4 of 4	1.30	Up
Salivary gland	217 ± 9	4 of 4	1.23	Up
Crop	181 ± 4	4 of 4	1.00	None
Midgut	160 ± 6	4 of 4	0.90	None
Tubule	195 ± 12	4 of 4	1.10	None
Hindgut	186 ± 4	4 of 4	1.10	None
Heart	188 ± 6	4 of 4	1.07	None
Fat body	139 ± 17	4 of 4	0.79	Down
Ovary	299 ± 7	4 of 4	1.70	Up
Testis	50 ± 3	4 of 4	0.30	Down
Male accessory glands	209 ± 7	4 of 4	1.20	Up
Virgin spermatheca	173 ± 4	4 of 4	0.98	None
Mated spermatheca	173 ± 10	4 of 4	0.98	None
Adult carcass	169 ± 4	4 of 4	1.00	None
Larval CNS	377 ± 25	4 of 4	2.13	Up
Larval Salivary gland	276 ± 4	4 of 4	1.56	Up
Larval midgut	172 ± 17	4 of 4	0.97	None
Larval tubule	348 ± 7	4 of 4	2.00	Up
Larval hindgut	173 ± 13	4 of 4	0.98	None
Larval fat body	194 ± 26	4 of 4	1.10	None
Larval trachea	203 ± 13	4 of 4	1.15	None
Larval carcass	185 ± 15	4 of 4	1.05	None
S2 cells (growing)	281 ± 7	4 of 4	1.59	Up
Whole fly	177 ± 10	4 of 4

Looking for FBgn0030944. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720