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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030946 through 18771 annotations produced 1 hits



(CG6659):

Annotation Number : CG6659
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030946
Gbrowse : chrX:18547424-18551319 (-) // 100.0 //
Probeset : 1635481_a_at
Accessions : protein= NP_573317; /// NP_728189;, nucleotide= NM_133089; /// NM_167627;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030946.
BDGP gene expression has embryonic in situ data for CG6659: 4 pix of staining in 1 body parts.
BioGrid reports that CG6659 interacts with CG7433 .
VDRC has 2 RNAi stocks for FBgn0030946 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 14 of 4 1.30Up
Head77 24 of 4 0.60Down
Eye68 14 of 4 0.57Down
Thoracicoabdominal ganglion194 54 of 4 1.60Up
Salivary gland115 64 of 4 0.96None
Crop72 34 of 4 0.60Down
Midgut536 214 of 4 4.50Up
Tubule490 284 of 4 4.10Up
Hindgut93 24 of 4 0.80Down
Heart66 14 of 4 0.56Down
Fat body78 34 of 4 0.66Down
Ovary121 24 of 4 1.00None
Testis75 24 of 4 0.60Down
Male accessory glands98 54 of 4 0.80None
Virgin spermatheca63 44 of 4 0.53Down
Mated spermatheca62 44 of 4 0.53Down
Adult carcass62 44 of 4 0.50Down
Larval CNS185 94 of 4 1.55Up
Larval Salivary gland161 44 of 4 1.35Up
Larval midgut106 24 of 4 0.89None
Larval tubule273 34 of 4 2.30Up
Larval hindgut127 34 of 4 1.07None
Larval fat body91 54 of 4 0.80Down
Larval trachea110 94 of 4 0.92None
Larval carcass94 44 of 4 0.79Down
S2 cells (growing)334 44 of 4 2.80Up
Whole fly119 74 of 4

Looking for FBgn0030946. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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