Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030947 through 18771 annotations produced 1 hits



(CG6696):

Annotation Number : CG6696
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030947
Gbrowse : chrX:18554521-18556186 (-) // 100.0 //
Probeset : 1640402_at
Accessions : protein= NP_573318;, nucleotide= NM_133090;
Pathway : 0017090 // meprin A complex // inferred from sequence or structural similarity
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0030947.
VDRC has 5 RNAi stocks for FBgn0030947 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 1.70None
Head3 10 of 4 1.90None
Eye2 00 of 4 1.33None
Thoracicoabdominal ganglion0 00 of 4 0.40None
Salivary gland3 10 of 4 2.32None
Crop1 00 of 4 0.90None
Midgut0 00 of 4 0.40None
Tubule0 00 of 4 0.50Down
Hindgut0 00 of 4 0.40None
Heart4 10 of 4 2.45None
Fat body2 10 of 4 1.64None
Ovary0 00 of 4 0.50None
Testis0 00 of 4 0.50None
Male accessory glands0 00 of 4 0.50None
Virgin spermatheca1 00 of 4 1.08None
Mated spermatheca0 00 of 4 0.53None
Adult carcass2 00 of 4 1.30None
Larval CNS1 00 of 4 0.73None
Larval Salivary gland2 00 of 4 1.42None
Larval midgut4 20 of 4 2.83None
Larval tubule1 00 of 4 0.60None
Larval hindgut1 00 of 4 1.03None
Larval fat body0 00 of 4 0.40None
Larval trachea46 54 of 428.06Up
Larval carcass2 00 of 4 1.73None
S2 cells (growing)1 00 of 4 0.86None
Whole fly1 10 of 4

Looking for FBgn0030947. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime