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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030952 through 18771 annotations produced 1 hits



(CG12609):

Annotation Number : CG12609
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030952
Gbrowse : chrX:18640401-18642339 (-) // 100.0 //
Probeset : 1635962_a_at
Accessions : protein= NP_573322; /// NP_728194;, nucleotide= NM_133094; /// NM_167629;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030952.
BioGrid reports that CG12609 interacts with CG15533 CG15634 CG1728 .
VDRC has 1 RNAi stocks for FBgn0030952 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.10Down
Head6 00 of 4 0.20Down
Eye3 00 of 4 0.08Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland12 40 of 4 0.32Down
Crop3 00 of 4 0.10Down
Midgut5 20 of 4 0.10Down
Tubule5 10 of 4 0.10Down
Hindgut3 00 of 4 0.10Down
Heart2 10 of 4 0.05Down
Fat body8 23 of 4 0.20Down
Ovary3 01 of 4 0.10Down
Testis495 74 of 412.30Up
Male accessory glands10 31 of 4 0.30Down
Virgin spermatheca7 13 of 4 0.18Down
Mated spermatheca6 11 of 4 0.17Down
Adult carcass8 10 of 4 0.20Down
Larval CNS4 32 of 4 0.12Down
Larval Salivary gland8 01 of 4 0.22Down
Larval midgut5 10 of 4 0.14Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut3 02 of 4 0.10Down
Larval fat body60 284 of 4 1.50None
Larval trachea6 41 of 4 0.16Down
Larval carcass7 12 of 4 0.17Down
S2 cells (growing)3 00 of 4 0.08Down
Whole fly40 14 of 4

Looking for FBgn0030952. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime