FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0030955 through 18771 annotations produced 2 hits

/// (CG6891 /// CG6900):

Annotation Number : CG6900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030955 /// FBgn0030958
Gbrowse : chrX:18679753-18680156 (+) // 100.0 //
Probeset : 1636196_s_at
Accessions : protein= NP_573323; /// NP_728196; /// NP_728199;, nucleotide= NM_133095; /// NM_167630; /// NM_167632;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from electronic annotation
FlyMine data for FBgn0030955 /// FBgn0030958.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	32 ± 7	4 of 4	0.10	Down
Head	31 ± 3	4 of 4	0.10	Down
Eye	36 ± 5	4 of 4	0.12	Down
Thoracicoabdominal ganglion	54 ± 2	4 of 4	0.20	Down
Salivary gland	508 ± 11	4 of 4	1.66	Up
Crop	156 ± 6	4 of 4	0.50	Down
Midgut	1296 ± 30	4 of 4	4.20	Up
Tubule	4246 ± 91	4 of 4	13.90	Up
Hindgut	736 ± 21	4 of 4	2.40	Up
Heart	277 ± 29	4 of 4	0.91	None
Fat body	28 ± 21	4 of 4	0.09	Down
Ovary	125 ± 5	4 of 4	0.40	Down
Testis	257 ± 7	4 of 4	0.80	None
Male accessory glands	224 ± 39	4 of 4	0.70	None
Virgin spermatheca	104 ± 10	4 of 4	0.34	Down
Mated spermatheca	188 ± 33	4 of 4	0.62	None
Adult carcass	44 ± 4	4 of 4	0.10	Down
Larval CNS	435 ± 65	4 of 4	1.42	Up
Larval Salivary gland	1396 ± 50	4 of 4	4.56	Up
Larval midgut	3266 ± 89	4 of 4	10.67	Up
Larval tubule	3158 ± 31	4 of 4	10.30	Up
Larval hindgut	2067 ± 83	4 of 4	6.75	Up
Larval fat body	1491 ± 187	4 of 4	4.90	Up
Larval trachea	412 ± 124	4 of 4	1.35	None
Larval carcass	818 ± 230	4 of 4	2.67	None
S2 cells (growing)	2376 ± 36	4 of 4	7.76	Up
Whole fly	306 ± 36	4 of 4

(CG6891):

Annotation Number : CG6891
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030955
Gbrowse : chrX:18669262-18675378 (+) // 100.0 //
Probeset : 1628314_a_at
Accessions : protein= NP_573323; /// NP_728196;, nucleotide= NM_133095; /// NM_167630;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003779 // actin binding // inferred from electronic annotation
FlyMine data for FBgn0030955.
BioGrid reports that CG6891 interacts with CG8078 CG6998 CG8420 .
VDRC has 3 RNAi stocks for FBgn0030955 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	10 ± 2	1 of 4	0.10	Down
Head	13 ± 2	0 of 4	0.10	Down
Eye	10 ± 0	4 of 4	0.09	Down
Thoracicoabdominal ganglion	15 ± 1	1 of 4	0.10	Down
Salivary gland	198 ± 7	4 of 4	1.70	Up
Crop	61 ± 3	4 of 4	0.50	Down
Midgut	370 ± 6	4 of 4	3.20	Up
Tubule	1998 ± 98	4 of 4	17.00	Up
Hindgut	338 ± 17	4 of 4	2.90	Up
Heart	111 ± 14	4 of 4	0.95	None
Fat body	11 ± 10	0 of 4	0.10	Down
Ovary	47 ± 2	4 of 4	0.40	Down
Testis	94 ± 6	4 of 4	0.80	None
Male accessory glands	51 ± 17	4 of 4	0.40	Down
Virgin spermatheca	16 ± 1	0 of 4	0.14	Down
Mated spermatheca	38 ± 6	3 of 4	0.33	Down
Adult carcass	15 ± 5	0 of 4	0.10	Down
Larval CNS	138 ± 33	4 of 4	1.19	None
Larval Salivary gland	355 ± 13	4 of 4	3.04	Up
Larval midgut	1321 ± 73	4 of 4	11.28	Up
Larval tubule	1692 ± 37	4 of 4	14.40	Up
Larval hindgut	908 ± 51	4 of 4	7.76	Up
Larval fat body	514 ± 69	4 of 4	4.40	Up
Larval trachea	266 ± 56	4 of 4	2.28	Up
Larval carcass	311 ± 93	4 of 4	2.66	None
S2 cells (growing)	1379 ± 18	4 of 4	11.77	Up
Whole fly	117 ± 16	4 of 4

Looking for FBgn0030955. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720