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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030959 through 18771 annotations produced 2 hits



(CG6961):

Annotation Number : CG6961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030959
Gbrowse : chrUextra:586193-587722 (-) // 71.32 // /// chrX:18680174-18682238 (-) // 99.79 // /// chrX:18675323-18677547 (-) // 96.04 //
Probeset : 1640361_at
Accessions : protein= NP_573325;, nucleotide= NM_133097;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030959.
BDGP gene expression has embryonic in situ data for CG6961: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 204 of 4 0.40Down
Head140 14 of 4 0.30Down
Eye115 124 of 4 0.26Down
Thoracicoabdominal ganglion172 154 of 4 0.40Down
Salivary gland102 164 of 4 0.23Down
Crop211 84 of 4 0.50Down
Midgut100 44 of 4 0.20Down
Tubule133 44 of 4 0.30Down
Hindgut101 54 of 4 0.20Down
Heart140 144 of 4 0.31Down
Fat body164 134 of 4 0.37Down
Ovary983 164 of 4 2.20Up
Testis806 384 of 4 1.80Up
Male accessory glands144 134 of 4 0.30Down
Virgin spermatheca331 234 of 4 0.73Down
Mated spermatheca347 104 of 4 0.77None
Adult carcass127 104 of 4 0.30Down
Larval CNS594 434 of 4 1.32Up
Larval Salivary gland330 214 of 4 0.73Down
Larval midgut121 104 of 4 0.27Down
Larval tubule118 104 of 4 0.30Down
Larval hindgut220 24 of 4 0.49Down
Larval fat body334 234 of 4 0.70Down
Larval trachea300 464 of 4 0.67Down
Larval carcass405 194 of 4 0.90None
S2 cells (growing)285 84 of 4 0.63Down
Whole fly450 374 of 4



/// (CG18259 /// CG6961):

Annotation Number : CG6961
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030956 /// FBgn0030959
Gbrowse : chrUextra:586193-587722 (-) // 71.32 // /// chrX:18680174-18682238 (-) // 99.79 // /// chrX:18675323-18677547 (-) // 96.04 //
Probeset : 1628663_s_at
Accessions : protein= NP_573324; /// NP_573325;, nucleotide= NM_133096; /// NM_133097;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0030956 /// FBgn0030959.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 14 of 4 0.80None
Head93 94 of 4 0.40Down
Eye77 44 of 4 0.34Down
Thoracicoabdominal ganglion124 24 of 4 0.50Down
Salivary gland132 104 of 4 0.58Down
Crop116 64 of 4 0.50Down
Midgut79 54 of 4 0.40Down
Tubule134 74 of 4 0.60Down
Hindgut97 34 of 4 0.40Down
Heart74 14 of 4 0.33Down
Fat body57 34 of 4 0.25Down
Ovary344 94 of 4 1.50Up
Testis354 54 of 4 1.60Up
Male accessory glands106 54 of 4 0.50Down
Virgin spermatheca111 14 of 4 0.49Down
Mated spermatheca128 34 of 4 0.57Down
Adult carcass82 104 of 4 0.40Down
Larval CNS232 204 of 4 1.02None
Larval Salivary gland138 34 of 4 0.61Down
Larval midgut59 44 of 4 0.26Down
Larval tubule113 64 of 4 0.50Down
Larval hindgut92 44 of 4 0.41Down
Larval fat body159 64 of 4 0.70Down
Larval trachea146 74 of 4 0.64Down
Larval carcass128 84 of 4 0.56Down
S2 cells (growing)224 54 of 4 0.99None
Whole fly227 184 of 4

Looking for FBgn0030959. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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