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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030960 through 18771 annotations produced 1 hits



(CG7053):

Annotation Number : CG7053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030960
Gbrowse : chrX:18685700-18687548 (+) // 100.0 //
Probeset : 1640015_at
Accessions : protein= NP_573326;, nucleotide= NM_133098;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030960.
BDGP gene expression has embryonic in situ data for CG7053: 17 pix of staining in 3 body parts.
BioGrid reports that CG7053 interacts with CG7331 .
TRiP has 1 RNAi stocks for FBgn0030960 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030960 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 ± 104 of 4 3.20Up
Head184 ± 64 of 4 1.70Up
Eye204 ± 54 of 4 1.90Up
Thoracicoabdominal ganglion265 ± 84 of 4 2.50Up
Salivary gland137 ± 34 of 4 1.28Up
Crop285 ± 124 of 4 2.70Up
Midgut167 ± 24 of 4 1.60Up
Tubule150 ± 44 of 4 1.40Up
Hindgut130 ± 24 of 4 1.20None
Heart175 ± 64 of 4 1.64Up
Fat body272 ± 374 of 4 2.54Up
Ovary121 ± 34 of 4 1.10None
Testis24 ± 24 of 4 0.20Down
Male accessory glands138 ± 34 of 4 1.30Up
Virgin spermatheca192 ± 164 of 4 1.79Up
Mated spermatheca167 ± 94 of 4 1.56Up
Adult carcass174 ± 114 of 4 1.60Up
Larval CNS130 ± 154 of 4 1.22None
Larval Salivary gland81 ± 54 of 4 0.76Down
Larval midgut138 ± 184 of 4 1.29None
Larval tubule145 ± 34 of 4 1.40Up
Larval hindgut109 ± 54 of 4 1.01None
Larval fat body43 ± 24 of 4 0.40Down
Larval trachea84 ± 94 of 4 0.78None
Larval carcass73 ± 54 of 4 0.69Down
S2 cells (growing)120 ± 54 of 4 1.12None
Whole fly107 ± 74 of 4

Looking for FBgn0030960. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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