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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030961 through 18771 annotations produced 1 hits


Annotation Number : CG7058
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030961
Gbrowse : chrX:18700810-18706035 (+) // 100.0 //
Probeset : 1639909_at
Accessions : protein= NP_573327;, nucleotide= NM_133099;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0030961.
VDRC has 2 RNAi stocks for FBgn0030961 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain293 64 of 435.80Up
Head62 34 of 4 7.60Up
Eye21 24 of 4 2.61Up
Thoracicoabdominal ganglion257 74 of 431.40Up
Salivary gland7 30 of 4 0.85None
Crop7 03 of 4 0.90None
Midgut6 02 of 4 0.80None
Tubule6 01 of 4 0.80Down
Hindgut4 11 of 4 0.50None
Heart3 11 of 4 0.45Down
Fat body9 34 of 4 1.18None
Ovary4 02 of 4 0.50Down
Testis2 00 of 4 0.30Down
Male accessory glands5 11 of 4 0.70None
Virgin spermatheca11 14 of 4 1.42None
Mated spermatheca10 14 of 4 1.25None
Adult carcass8 21 of 4 1.10None
Larval CNS122 114 of 414.98Up
Larval Salivary gland4 12 of 4 0.55None
Larval midgut3 10 of 4 0.40Down
Larval tubule5 02 of 4 0.70None
Larval hindgut2 12 of 4 0.35Down
Larval fat body4 10 of 4 0.60None
Larval trachea4 22 of 4 0.55None
Larval carcass5 11 of 4 0.66None
S2 cells (growing)8 04 of 4 1.01None
Whole fly8 14 of 4

Looking for FBgn0030961. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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