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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030968 through 18771 annotations produced 1 hits



chrX:18749951-18751484 (-) // 100.0 // ():

Annotation Number : CG7322
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623769_at
Accessions : protein= , nucleotide= NP_573333;
Pathway : 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from
FlyMine data for full length.
Homophila reports that CG7322 is a close match (2e-12) to human gene LCA3;RDH12 (NP_689656), a gene associated with Leber congenital amaurosis, type III, 604232 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 14 of 4 0.20Down
Head598 704 of 4 2.30Up
Eye243 224 of 4 0.92None
Thoracicoabdominal ganglion44 34 of 4 0.20Down
Salivary gland86 124 of 4 0.33Down
Crop107 74 of 4 0.40Down
Midgut190 194 of 4 0.70Down
Tubule2015 1404 of 4 7.60Up
Hindgut264 124 of 4 1.00None
Heart667 594 of 4 2.51Up
Fat body1188 1484 of 4 4.47Up
Ovary97 54 of 4 0.40Down
Testis18 14 of 4 0.10Down
Male accessory glands39 32 of 4 0.10Down
Virgin spermatheca1032 554 of 4 3.89Up
Mated spermatheca831 884 of 4 3.13Up
Adult carcass781 254 of 4 2.90Up
Larval CNS40 44 of 4 0.15Down
Larval Salivary gland193 154 of 4 0.73Down
Larval midgut111 94 of 4 0.42Down
Larval tubule379 274 of 4 1.40Up
Larval hindgut115 34 of 4 0.44Down
Larval fat body1146 1374 of 4 4.30Up
Larval trachea86 304 of 4 0.32Down
Larval carcass168 264 of 4 0.63Down
S2 cells (growing)19 22 of 4 0.07Down
Whole fly265 104 of 4

Looking for FBgn0030968. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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