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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030970 through 18771 annotations produced 1 hits


Annotation Number : CG7326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030970
Gbrowse : chrX:18755580-18757749 (-) // 99.77 //
Probeset : 1627124_at
Accessions : protein= NP_573335;, nucleotide= NM_133107;
FlyMine data for FBgn0030970.
BDGP gene expression has embryonic in situ data for CG7326: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0030970 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain145 64 of 4 0.90None
Head86 124 of 4 0.50Down
Eye73 44 of 4 0.45Down
Thoracicoabdominal ganglion249 124 of 4 1.50Up
Salivary gland76 64 of 4 0.47Down
Crop63 14 of 4 0.40Down
Midgut62 54 of 4 0.40Down
Tubule42 24 of 4 0.30Down
Hindgut46 04 of 4 0.30Down
Heart56 34 of 4 0.35Down
Fat body83 54 of 4 0.52Down
Ovary412 54 of 4 2.60Up
Testis26 34 of 4 0.20Down
Male accessory glands61 34 of 4 0.40Down
Virgin spermatheca38 24 of 4 0.24Down
Mated spermatheca49 44 of 4 0.31Down
Adult carcass40 44 of 4 0.20Down
Larval CNS149 134 of 4 0.93None
Larval Salivary gland190 54 of 4 1.18Up
Larval midgut103 24 of 4 0.64Down
Larval tubule143 44 of 4 0.90None
Larval hindgut91 34 of 4 0.57Down
Larval fat body70 74 of 4 0.40Down
Larval trachea103 64 of 4 0.64Down
Larval carcass72 24 of 4 0.45Down
S2 cells (growing)166 44 of 4 1.03None
Whole fly161 94 of 4

Looking for FBgn0030970. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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