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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030982 through 18771 annotations produced 1 hits



(CG7423):

Annotation Number : CG7423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030982
Gbrowse : chrX:18976837-18977212 (-) // 100.0 //
Probeset : 1624966_at
Accessions : protein= NP_573347;, nucleotide= NM_133119;
FlyMine data for FBgn0030982.
VDRC has 3 RNAi stocks for FBgn0030982 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head6 12 of 4 0.50None
Eye1 00 of 4 0.11Down
Thoracicoabdominal ganglion3 00 of 4 0.30Down
Salivary gland11 22 of 4 0.86None
Crop4 10 of 4 0.30Down
Midgut5 10 of 4 0.40Down
Tubule7 10 of 4 0.60Down
Hindgut4 10 of 4 0.40Down
Heart3 00 of 4 0.24Down
Fat body3 30 of 4 0.29Down
Ovary3 12 of 4 0.30Down
Testis134 104 of 410.40Up
Male accessory glands12 50 of 4 0.90None
Virgin spermatheca2 10 of 4 0.20Down
Mated spermatheca4 10 of 4 0.34Down
Adult carcass6 20 of 4 0.50None
Larval CNS4 00 of 4 0.32Down
Larval Salivary gland3 00 of 4 0.28Down
Larval midgut4 10 of 4 0.32Down
Larval tubule7 10 of 4 0.60None
Larval hindgut3 11 of 4 0.27Down
Larval fat body21 73 of 4 1.60None
Larval trachea4 31 of 4 0.32Down
Larval carcass3 10 of 4 0.24Down
S2 cells (growing)3 10 of 4 0.23Down
Whole fly13 23 of 4

Looking for FBgn0030982. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime