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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030983 through 18771 annotations produced 1 hits



(CG15882):

Annotation Number : CG15882
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030983
Gbrowse : chrX:19017832-19018309 (-) // 100.0 //
Probeset : 1629296_at
Accessions : protein= NP_573348;, nucleotide= NM_133120;
FlyMine data for FBgn0030983.
VDRC has 3 RNAi stocks for FBgn0030983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.20Down
Head4 10 of 4 0.30Down
Eye3 00 of 4 0.29Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland11 21 of 4 0.91None
Crop2 10 of 4 0.20Down
Midgut9 30 of 4 0.80None
Tubule1 00 of 4 0.10Down
Hindgut5 00 of 4 0.40Down
Heart4 10 of 4 0.34Down
Fat body4 20 of 4 0.39Down
Ovary2 00 of 4 0.20Down
Testis80 34 of 4 6.70Up
Male accessory glands3 30 of 4 0.30None
Virgin spermatheca5 00 of 4 0.44Down
Mated spermatheca6 10 of 4 0.55None
Adult carcass8 00 of 4 0.70None
Larval CNS3 10 of 4 0.31Down
Larval Salivary gland3 10 of 4 0.31Down
Larval midgut11 00 of 4 0.97None
Larval tubule2 10 of 4 0.20Down
Larval hindgut2 00 of 4 0.24Down
Larval fat body13 80 of 4 1.20None
Larval trachea1 10 of 4 0.16Down
Larval carcass2 10 of 4 0.19Down
S2 cells (growing)4 00 of 4 0.36Down
Whole fly12 21 of 4

Looking for FBgn0030983. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime