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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030984 through 18771 annotations produced 1 hits



twiggy (tgy):

Annotation Number : CG7440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030984
Gbrowse : chrX:19019305-19021346 (-) // 100.0 //
Probeset : 1636995_at
Accessions : protein= NP_001033854; /// NP_573349;, nucleotide= NM_001038765; /// NM_133121;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0008378 // galactosyltransferase activity // infer
FlyMine data for FBgn0030984.
BDGP gene expression has embryonic in situ data for CG7440: 9 pix of staining in 3 body parts.
Homophila reports that CG7440 is a close match (8e-16) to human gene C1GALT1C1;C1GALT2;COSMC (NP_689905), a gene associated with Tn syndrome, 300622 (3).
BioGrid reports that CG7440 interacts with CG7461 .
VDRC has 2 RNAi stocks for FBgn0030984 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head14 ± 11 of 4 0.30Down
Eye3 ± 10 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland11 ± 50 of 4 0.21Down
Crop13 ± 20 of 4 0.30Down
Midgut439 ± 344 of 4 8.30Up
Tubule9 ± 10 of 4 0.20Down
Hindgut33 ± 24 of 4 0.60Down
Heart6 ± 10 of 4 0.12Down
Fat body17 ± 62 of 4 0.33Down
Ovary3 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands8 ± 40 of 4 0.20Down
Virgin spermatheca3 ± 00 of 4 0.06Down
Mated spermatheca7 ± 10 of 4 0.14Down
Adult carcass12 ± 30 of 4 0.20Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland2 ± 00 of 4 0.05Down
Larval midgut322 ± 204 of 4 6.08Up
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut20 ± 22 of 4 0.39Down
Larval fat body15 ± 30 of 4 0.30Down
Larval trachea8 ± 10 of 4 0.17Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)5 ± 10 of 4 0.09Down
Whole fly53 ± 44 of 4

Looking for FBgn0030984. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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