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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030991 through 18771 annotations produced 1 hits



(CG7453):

Annotation Number : CG7453
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030991
Gbrowse : chrX:19074210-19076035 (+) // 100.0 //
Probeset : 1630157_a_at
Accessions : protein= NP_573355;, nucleotide= NM_133127;
FlyMine data for FBgn0030991.
VDRC has 2 RNAi stocks for FBgn0030991 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 ± 54 of 4 0.60Down
Head232 ± 174 of 4 0.70Down
Eye483 ± 54 of 4 1.52Up
Thoracicoabdominal ganglion164 ± 54 of 4 0.50Down
Salivary gland341 ± 144 of 4 1.07None
Crop417 ± 154 of 4 1.30Up
Midgut256 ± 104 of 4 0.80None
Tubule201 ± 94 of 4 0.60Down
Hindgut207 ± 14 of 4 0.70Down
Heart541 ± 314 of 4 1.70Up
Fat body273 ± 184 of 4 0.86None
Ovary527 ± 64 of 4 1.70Up
Testis512 ± 84 of 4 1.60Up
Male accessory glands249 ± 64 of 4 0.80None
Virgin spermatheca477 ± 204 of 4 1.50Up
Mated spermatheca527 ± 214 of 4 1.65Up
Adult carcass240 ± 114 of 4 0.80Down
Larval CNS286 ± 124 of 4 0.90None
Larval Salivary gland403 ± 124 of 4 1.26Up
Larval midgut295 ± 124 of 4 0.92None
Larval tubule307 ± 64 of 4 1.00None
Larval hindgut209 ± 44 of 4 0.66Down
Larval fat body401 ± 64 of 4 1.30Up
Larval trachea520 ± 194 of 4 1.63Up
Larval carcass320 ± 144 of 4 1.01None
S2 cells (growing)1262 ± 374 of 4 3.95Up
Whole fly319 ± 234 of 4

Looking for FBgn0030991. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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