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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0030992 through 18771 annotations produced 1 hits


Annotation Number : CG33253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030992
Gbrowse : chrX:19077456-19081312 (+) // 100.0 //
Probeset : 1624679_at
Accessions : protein= NP_996512;, nucleotide= NM_206789;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
FlyMine data for FBgn0030992.
BDGP gene expression has embryonic in situ data for CG33253: 22 pix of staining in 3 body parts.
Homophila reports that CG33253 is a close match (6e-57) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
TRiP has 1 RNAi stocks for FBgn0030992 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030992 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.20Down
Head3 10 of 4 0.60None
Eye2 10 of 4 0.49None
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland5 20 of 4 1.09None
Crop57 44 of 410.70Up
Midgut6 12 of 4 1.30None
Tubule5 00 of 4 1.00None
Hindgut13 24 of 4 2.40Up
Heart3 01 of 4 0.70None
Fat body4 50 of 4 0.80None
Ovary0 00 of 4 0.10Down
Testis3 00 of 4 0.60None
Male accessory glands4 10 of 4 0.80None
Virgin spermatheca4 10 of 4 0.91None
Mated spermatheca4 10 of 4 0.74None
Adult carcass2 00 of 4 0.50None
Larval CNS2 00 of 4 0.50None
Larval Salivary gland3 11 of 4 0.65None
Larval midgut8 11 of 4 1.64None
Larval tubule4 12 of 4 0.90None
Larval hindgut16 14 of 4 3.07Up
Larval fat body1 00 of 4 0.30None
Larval trachea3 20 of 4 0.56None
Larval carcass1 01 of 4 0.31None
S2 cells (growing)3 00 of 4 0.60None
Whole fly5 11 of 4

Looking for FBgn0030992. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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