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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030993 through 18771 annotations produced 1 hits



Mec2 (Mec2):

Annotation Number : CG7635
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030993
Gbrowse : chrX:19082067-19084226 (+) // 100.0 //
Probeset : 1630375_at
Accessions : protein= NP_573357;, nucleotide= NM_133129;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0030993.
BDGP gene expression has embryonic in situ data for CG7635: 5 pix of staining in 1 body parts.
Homophila reports that CG7635 is a close match (2e-55) to human gene PDCN;NPHS2;SRN1 (NP_055440), a gene associated with Nephrotic syndrome, steroid-resistant, autosomal recessive, 600995 (3).
VDRC has 2 RNAi stocks for FBgn0030993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 33 of 4 0.10Down
Head89 ± 64 of 4 0.50Down
Eye52 ± 84 of 4 0.27Down
Thoracicoabdominal ganglion12 ± 02 of 4 0.10Down
Salivary gland14 ± 41 of 4 0.07Down
Crop50 ± 24 of 4 0.30Down
Midgut2051 ± 524 of 410.50Up
Tubule431 ± 904 of 4 2.20Up
Hindgut257 ± 104 of 4 1.30None
Heart519 ± 434 of 4 2.65Up
Fat body127 ± 364 of 4 0.65None
Ovary9 ± 10 of 4 0.00Down
Testis32 ± 24 of 4 0.20Down
Male accessory glands17 ± 51 of 4 0.10Down
Virgin spermatheca53 ± 34 of 4 0.27Down
Mated spermatheca92 ± 114 of 4 0.47Down
Adult carcass89 ± 84 of 4 0.50Down
Larval CNS4 ± 20 of 4 0.02Down
Larval Salivary gland5 ± 20 of 4 0.03Down
Larval midgut2551 ± 954 of 413.03Up
Larval tubule1128 ± 304 of 4 5.80Up
Larval hindgut442 ± 244 of 4 2.26Up
Larval fat body468 ± 614 of 4 2.40Up
Larval trachea40 ± 34 of 4 0.21Down
Larval carcass114 ± 194 of 4 0.58Down
S2 cells (growing)897 ± 184 of 4 4.58Up
Whole fly195 ± 254 of 4

Looking for FBgn0030993. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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