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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0030994 through 18771 annotations produced 1 hits



(CG14193):

Annotation Number : CG14193
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030994
Gbrowse : chrX:19084246-19085066 (+) // 100.0 //
Probeset : 1629671_at
Accessions : protein= NP_573358;, nucleotide= NM_133130;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030994.
BDGP gene expression has embryonic in situ data for CG14193: 13 pix of staining in 2 body parts.
BioGrid reports that CG14193 interacts with CG41099 CG9902 .
TRiP has 1 RNAi stocks for FBgn0030994 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 13 of 4 0.80None
Head5 ± 11 of 4 0.70None
Eye5 ± 01 of 4 0.84None
Thoracicoabdominal ganglion3 ± 11 of 4 0.50None
Salivary gland12 ± 40 of 4 1.84None
Crop9 ± 04 of 4 1.40None
Midgut31 ± 04 of 4 4.60Up
Tubule14 ± 03 of 4 2.10Up
Hindgut6 ± 12 of 4 1.00None
Heart50 ± 244 of 4 7.44None
Fat body15 ± 54 of 4 2.30Up
Ovary3 ± 10 of 4 0.50None
Testis10 ± 14 of 4 1.50None
Male accessory glands4 ± 10 of 4 0.70None
Virgin spermatheca8 ± 02 of 4 1.21None
Mated spermatheca8 ± 21 of 4 1.26None
Adult carcass13 ± 23 of 4 2.00None
Larval CNS4 ± 13 of 4 0.60None
Larval Salivary gland6 ± 10 of 4 0.89None
Larval midgut32 ± 44 of 4 4.71Up
Larval tubule33 ± 24 of 4 4.90Up
Larval hindgut9 ± 12 of 4 1.43None
Larval fat body19 ± 13 of 4 2.80Up
Larval trachea4 ± 22 of 4 0.65None
Larval carcass14 ± 13 of 4 2.05Up
S2 cells (growing)94 ± 44 of 413.83Up
Whole fly6 ± 10 of 4

Looking for FBgn0030994. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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